Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msed_0680Putative membrane protein. (533 aa)    
Predicted Functional Partners:
Msed_0678
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase.
       0.735
tbp
TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
 
   
 0.688
Msed_0679
Hypothetical protein.
       0.684
Msed_0651
PFAM: type II secretion system protein.
  
     0.680
Msed_0822
PFAM: band 7 protein.
  
     0.649
Msed_1805
PFAM: Oligosaccharyl transferase, STT3 subunit.
  
     0.649
Msed_2233
PFAM: transcriptional regulator TrmB.
  
     0.616
Msed_2073
ATPase-like protein.
  
     0.615
Msed_1622
PFAM: SpoVT/AbrB domain protein.
  
     0.581
Msed_0769
PFAM: SMC domain protein.
  
     0.573
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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