STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0699PFAM: protein of unknown function UPF0131. (268 aa)    
Predicted Functional Partners:
Msed_0697
PFAM: protein of unknown function DUF107.
       0.938
Msed_0698
Hypothetical protein.
       0.837
Msed_0696
PFAM: Peptidase A5, thermopsin.
       0.692
Msed_0695
PFAM: band 7 protein.
       0.605
Msed_1274
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.503
Msed_0592
S-layer domain-like protein.
  
     0.476
Msed_0612
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.463
Msed_0694
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
       0.460
Msed_0693
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
       0.457
Msed_1023
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
     0.449
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.