STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0705Physarolisin II, Serine peptidase, MEROPS family S53; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin. (1072 aa)    
Predicted Functional Partners:
Msed_0704
PFAM: Methyltransferase type 11.
 
     0.588
Msed_0254
PFAM: major facilitator superfamily MFS_1.
 
     0.561
Msed_0703
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase.
       0.537
Msed_0420
PFAM: major facilitator superfamily MFS_1.
 
     0.494
Msed_1819
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
 
     0.476
Msed_1181
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; TC 3.A.1.1.-.
  
     0.466
Msed_1368
Hypothetical protein.
 
     0.462
Msed_1035
PFAM: phosphoesterase.
  
     0.448
Msed_1265
Mn2+ and Fe2+ transporter of the NRAMP family-like protein.
 
     0.434
Msed_0800
PFAM: protein of unknown function DUF929.
  
     0.406
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.