STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0723PFAM: Chlorite dismutase. (215 aa)    
Predicted Functional Partners:
Msed_0722
Hypothetical protein.
       0.788
Msed_0720
PFAM: Uracil-DNA glycosylase superfamily.
 
     0.576
Msed_0721
Protein of unknown function DUF265; Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency; Belongs to the THEP1 NTPase family.
       0.551
Msed_0288
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.516
Msed_0997
PFAM: Rieske [2Fe-2S] domain protein.
 
    0.452
Msed_1289
PFAM: extracellular solute-binding protein, family 1.
 
     0.435
Msed_0322
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.415
Msed_1135
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin.
 
     0.409
Msed_0779
Periplasmic solute-binding protein-like protein.
  
     0.404
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.