STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0727PFAM: FAD linked oxidase domain protein. (989 aa)    
Predicted Functional Partners:
Msed_0726
PFAM: histidine triad (HIT) protein.
   
 
 0.797
Msed_0552
PFAM: FAD linked oxidase domain protein.
  
     0.718
Msed_1248
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit.
 
 
 0.664
Msed_0332
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit.
 
 
 0.647
Msed_0331
PFAM: electron transfer flavoprotein beta-subunit.
  
 
 0.611
Msed_0728
PFAM: peptidase M61 domain protein.
       0.603
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.537
Msed_0554
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein.
 
  
 0.536
Msed_0544
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
  
 0.521
Msed_0730
SPP-like hydrolase; TIGRFAM: Sucrose-phosphate phosphatase subfamily; HAD-superfamily hydrolase, subfamily IIB; SPP-like hydrolase; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3.
 
     0.516
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.