STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0732TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase. (225 aa)    
Predicted Functional Partners:
Msed_0733
Transcriptional regulator containing an HTH domain fused to a Zn-ribbon-like protein.
       0.942
Msed_0735
PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Belongs to the UPF0284 family.
       0.929
Msed_0731
PFAM: methyltransferase small.
 
     0.842
Msed_0734
dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase.
     
 0.786
Msed_0736
Hypothetical protein.
       0.676
Msed_0222
PFAM: FAD dependent oxidoreductase.
 
 
 0.553
Msed_0595
PFAM: NUDIX hydrolase.
  
 
 0.515
Msed_0724
PFAM: NUDIX hydrolase.
  
 
 0.515
Msed_0828
PFAM: aminotransferase, class V.
 
 
 0.510
Msed_1216
PFAM: MaoC domain protein dehydratase.
  
 
 0.491
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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