STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0754Hypothetical protein. (143 aa)    
Predicted Functional Partners:
Msed_0755
PFAM: Amidase.
 
     0.873
Msed_0753
Membrane protein-like protein.
       0.773
Msed_0752
Small-conductance mechanosensitive channel-like protein.
 
     0.555
Msed_0260
Metallopeptidase-like protein.
  
     0.521
Msed_1085
Dehydrogenase (flavoprotein)-like protein.
  
     0.519
Msed_1682
Dehydrogenase (flavoprotein)-like protein.
  
     0.512
hypA
Hydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
     0.431
Msed_0434
PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain.
  
     0.422
Msed_0224
PFAM: protein of unknown function DUF343.
  
     0.411
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.