STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0790PFAM: glycosyl transferase, family 2. (342 aa)    
Predicted Functional Partners:
Msed_0813
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein.
 
 
 0.778
Msed_1532
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
 
 0.754
Msed_0789
Hypothetical protein.
       0.746
Msed_0788
PFAM: short-chain dehydrogenase/reductase SDR.
   
 
 0.725
Msed_1406
PFAM: Creatininase.
  
  
 0.695
Msed_0787
PFAM: protein of unknown function DUF255.
       0.690
Msed_0791
Hypothetical protein.
       0.565
Msed_0592
S-layer domain-like protein.
  
     0.527
Msed_1810
PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein.
  
  
 0.520
Msed_1797
PFAM: protein kinase; SMART: serine/threonine protein kinase.
 
 
 0.507
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.