STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0804SMART: Pyrrolo-quinoline quinone. (536 aa)    
Predicted Functional Partners:
Msed_0363
Thiosulfate dehydrogenase (quinone) subunit DoxD; PFAM: TQO small subunit DoxD; DoxX family protein.
  
  
 0.960
Msed_0364
Thiosulfate dehydrogenase (quinone) subunit DoxA; PFAM: TQO small subunit DoxA domain protein.
     
 0.920
Msed_0374
PFAM: TQO small subunit DoxD; DoxX family protein.
    
 0.916
Msed_2080
NADPH:sulfur oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.
    
  0.900
Msed_2160
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein.
  
    0.637
Msed_0935
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
  
     0.577
Msed_0802
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.571
hisS
TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.509
rpl13
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.493
Msed_0310
PFAM: major facilitator superfamily MFS_1.
  
     0.483
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.