STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0866PFAM: General substrate transporter; major facilitator superfamily MFS_1. (458 aa)    
Predicted Functional Partners:
Msed_0891
PFAM: major facilitator superfamily MFS_1.
      
 0.760
Msed_1013
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.698
Msed_0416
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.671
Msed_0255
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.558
Msed_0867
Hypothetical protein.
       0.491
Msed_0864
PFAM: PilT protein domain protein.
       0.473
Msed_0865
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.
       0.473
Msed_0868
PFAM: transcriptional regulator PadR family protein.
       0.420
Msed_0869
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.420
Msed_0870
PFAM: ABC-2 type transporter.
       0.420
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.