STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0911Alpha-glucosidase; PFAM: glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family. (661 aa)    
Predicted Functional Partners:
Msed_1418
Alpha-amylase; PFAM: glycoside hydrolase, family 57.
    
 0.978
Msed_0636
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase.
   
  0.787
Msed_0845
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase.
   
  0.787
Msed_1791
PFAM: protein of unknown function, ATP binding.
    
 0.774
rps7
SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
   
   0.729
Msed_1889
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.724
Msed_1467
Aconitase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein.
   
 
 0.712
Msed_0153
TIGRFAM: glutaredoxin-like domain protein.
  
 
 0.698
Msed_0776
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain.
  
 
 0.698
Msed_1553
Hypothetical protein.
  
 
 0.698
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.