Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Msed_0912PFAM: glycoside hydrolase, family 13 domain protein. (91 aa)    
Predicted Functional Partners:
Msed_1417
Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein.
 
  
 0.920
Msed_1703
TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
  
 0.815
Msed_1418
Alpha-amylase; PFAM: glycoside hydrolase, family 57.
     
 0.762
Msed_1710
TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1.
  
  
 0.542
Msed_2264
TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1.
  
  
 0.542
Msed_0911
Alpha-glucosidase; PFAM: glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
     
 0.514
Msed_0622
Zn-dependent hydrolase of the beta-lactamase fold-like protein.
     
 0.452
Msed_0418
PFAM: protein of unknown function DUF72.
 
    0.434
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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