STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0944PFAM: Nickel-iron dehydrogenase small subunit, N-terminal domain protein. (432 aa)    
Predicted Functional Partners:
Msed_0945
Ni Fe-hydrogenase I large subunit-like protein.
 
 0.999
Msed_0920
Coenzyme F420-reducing hydrogenase alpha subunit-like protein.
 
 0.997
Msed_0923
PFAM: nickel-dependent hydrogenase, large subunit.
 
 0.997
Msed_0946
Hypothetical protein.
     
 0.950
Msed_0924
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit.
  
  
 
0.924
Msed_0916
Hydrogenase 2 maturation peptidase, Aspartic peptidase, MEROPS family A31; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein.
 
  
 0.831
Msed_0947
Fe-S oxidoreductase-like protein.
 
  
 0.785
Msed_1113
PFAM: succinate dehydrogenase, cytochrome b subunit.
  
  
 0.719
Msed_0468
Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 
 0.696
Msed_0915
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein.
 
 
 
 0.646
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.