STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1010PFAM: phosphoesterase. (532 aa)    
Predicted Functional Partners:
uppP
Bacitracin resistance protein BacA; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP).
 
     0.672
Msed_1009
PFAM: protein of unknown function DUF35.
 
     0.611
Msed_1008
Acetyl-CoA acetyltransferase-like protein.
 
     0.597
Msed_1007
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
       0.527
Msed_1305
PFAM: high-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.517
Msed_0313
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.471
htpX-2
Heat shock protein, Metallo peptidase, MEROPS family M48B; PFAM: peptidase M48, Ste24p; Belongs to the peptidase M48B family.
     
 0.467
Msed_0451
PFAM: natural resistance-associated macrophage protein.
 
   
 0.445
Msed_1265
Mn2+ and Fe2+ transporter of the NRAMP family-like protein.
 
   
 0.420
Msed_1496
PFAM: Na+/solute symporter.
  
     0.416
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.