STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1013PFAM: General substrate transporter; major facilitator superfamily MFS_1. (437 aa)    
Predicted Functional Partners:
Msed_0846
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.706
Msed_0866
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.698
Msed_0463
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.693
Msed_1222
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.672
Msed_0467
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.663
Msed_0426
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.638
Msed_0416
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.611
htpX-2
Heat shock protein, Metallo peptidase, MEROPS family M48B; PFAM: peptidase M48, Ste24p; Belongs to the peptidase M48B family.
       0.483
Msed_0255
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.445
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.