STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1033PFAM: ABC transporter related; SMART: AAA ATPase. (512 aa)    
Predicted Functional Partners:
Msed_1034
PFAM: cobalt transport protein.
 
 
 0.989
Msed_0847
PFAM: cobalt transport protein.
 
 
 0.941
Msed_1035
PFAM: phosphoesterase.
       0.773
Msed_1032
Hypothetical protein.
       0.748
Msed_1216
PFAM: MaoC domain protein dehydratase.
  
    0.674
Msed_0179
PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 
0.625
Msed_1180
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; TC 3.A.1.1.-.
  
  
 
0.583
Msed_1286
Trehalose ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 
0.580
Msed_0848
PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 
0.573
Msed_2091
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein.
 
  
 0.532
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.