STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1035PFAM: phosphoesterase. (451 aa)    
Predicted Functional Partners:
Msed_1010
PFAM: phosphoesterase.
  
  
 
0.904
Msed_0633
D-fructose 1,6-bisphosphatase; PFAM: inositol monophosphatase.
    
  0.900
Msed_1034
PFAM: cobalt transport protein.
 
     0.804
Msed_1033
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.776
Msed_1032
Hypothetical protein.
       0.734
Msed_0313
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.537
Msed_1305
PFAM: high-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.495
Msed_0705
Physarolisin II, Serine peptidase, MEROPS family S53; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.448
Msed_0451
PFAM: natural resistance-associated macrophage protein.
 
   
 0.439
Msed_1265
Mn2+ and Fe2+ transporter of the NRAMP family-like protein.
 
   
 0.438
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.