STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1052PFAM: peptidase M19, renal dipeptidase. (310 aa)    
Predicted Functional Partners:
Msed_1051
ATPase; PFAM: DUF234 DEXX-box ATPase; ATPase.
       0.536
Msed_0415
PFAM: NADH:flavin oxidoreductase/NADH oxidase.
  
    0.535
Msed_1174
PFAM: peptidase S45, penicillin amidase.
 
  
 0.521
Msed_1122
PFAM: Malate/L-lactate dehydrogenase.
  
    0.480
Msed_0737
PFAM: aminotransferase, class V.
 
  
 0.458
Msed_1666
TIGRFAM: peptidase S26B, signal peptidase.
       0.453
Msed_0243
Gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03; PFAM: gamma-glutamyltranspeptidase.
 
  
 0.448
Msed_0275
4-aminobutyrate aminotransferase apoenzyme; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.445
Msed_1484
PFAM: peptidase M20; peptidase dimerisation domain protein.
 
  
 0.410
Msed_1350
Hypothetical protein.
  
    0.400
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.