STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1061Hypothetical protein. (199 aa)    
Predicted Functional Partners:
Msed_0383
Hypothetical protein.
  
     0.593
Msed_1835
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
 
     0.590
Msed_0518
Hypothetical protein.
  
     0.586
Msed_0972
PFAM: major facilitator superfamily MFS_1.
 
     0.538
Msed_0803
PFAM: Vitamin K epoxide reductase.
  
     0.531
Msed_0376
Conserved hypothetical protein.
  
     0.528
Msed_1086
PFAM: protein of unknown function DUF105.
  
     0.504
Msed_1389
Zn-dependent protease-like protein.
  
     0.504
Msed_0969
PFAM: holliday junction resolvase.
  
     0.501
Msed_0441
ABC-type dipeptide transport system periplasmic component-like protein.
  
     0.495
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.