STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1085Dehydrogenase (flavoprotein)-like protein. (289 aa)    
Predicted Functional Partners:
Msed_0331
PFAM: electron transfer flavoprotein beta-subunit.
  
 
 0.714
Msed_2035
PFAM: Sjogrens syndrome scleroderma autoantigen 1.
  
     0.561
Msed_2089
Cobaltochelatase CobN subunit; PFAM: CobN/magnesium chelatase.
  
  
 0.558
Msed_0260
Metallopeptidase-like protein.
 
     0.541
Msed_0537
Hypothetical protein.
 
     0.520
Msed_0754
Hypothetical protein.
  
     0.519
Msed_0224
PFAM: protein of unknown function DUF343.
  
     0.516
Msed_0334
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.503
Msed_1250
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.503
Msed_1731
Uncharacterized coiled-coil protein-like protein.
  
     0.481
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.