STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1163Hypothetical protein. (886 aa)    
Predicted Functional Partners:
Msed_1164
PFAM: protein of unknown function DUF324.
  
 
 0.995
Msed_1166
PFAM: protein of unknown function DUF324.
  
 
 0.993
Msed_1165
CRISPR-associated protein.
     
 0.978
Msed_1160
TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324.
  
 
 0.959
Msed_1161
TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324.
  
 
 0.940
Msed_1162
PFAM: protein of unknown function DUF324.
     
 0.937
Msed_1159
Hypothetical protein.
     
 0.862
Msed_1154
TIGRFAM: CRISPR-associated protein, MJ1666 family; CRISPR-associated protein DxTHG motif.
     
 0.708
cas2
CRISPR-associated protein, Cas2 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.695
Msed_1137
Hypothetical protein.
  
  
 0.431
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.