STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1197Type II secretion system protein E; This flaI-like ATPbinding sequence was upregulated on Fe(II) oxidation; PFAM: type II secretion system protein E. (483 aa)    
Predicted Functional Partners:
Msed_1198
Type II secretion system protein; This flaJ-like permease was upregulated on Fe(II) oxidation; PFAM: type II secretion system protein.
  
  
 0.971
Msed_1324
Flagella assembly protein J-like protein.
 
  
 0.934
Msed_0651
PFAM: type II secretion system protein.
 
  
 0.895
Msed_2105
Hypothetical protein.
  
  
 0.877
Msed_1330
Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
  
  
 0.810
Msed_1194
Hypothetical protein.
     
 0.800
Msed_1195
Hypothetical protein.
     
 0.798
Msed_1196
Hypothetical protein.
       0.774
Msed_2090
PFAM: peptidase A24A, prepilin type IV; Peptidase A24B, FlaK-like.
     
 0.760
Msed_1326
ATPase involved in biogenesis of flagella-like protein.
 
  
 0.751
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.