STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1235PFAM: SMC domain protein. (359 aa)    
Predicted Functional Partners:
Msed_0157
PFAM: protein of unknown function DUF814.
  
  
 0.741
Msed_0972
PFAM: major facilitator superfamily MFS_1.
 
     0.497
Msed_1236
PFAM: beta-lactamase domain protein.
       0.454
Msed_0908
PFAM: PilT protein domain protein.
 
     0.443
Msed_0376
Conserved hypothetical protein.
 
     0.434
Msed_1818
PFAM: Bacterio-opsin activator, HTH domain protein.
  
     0.430
Msed_1086
PFAM: protein of unknown function DUF105.
  
     0.428
Msed_1031
Hypothetical protein.
  
     0.419
Msed_0441
ABC-type dipeptide transport system periplasmic component-like protein.
  
     0.413
Msed_1061
Hypothetical protein.
  
     0.408
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.