STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1287Trehalose ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component. (266 aa)    
Predicted Functional Partners:
Msed_1288
Trehalose ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.999
Msed_1289
PFAM: extracellular solute-binding protein, family 1.
 
 0.999
Msed_1286
Trehalose ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.989
Msed_1179
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
0.955
Msed_1180
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; TC 3.A.1.1.-.
 
   
 0.768
Msed_1178
PFAM: glycerophosphoryl diester phosphodiesterase.
 
  
 0.552
Msed_1297
2-keto-3-deoxygalactonate kinase / 2-keto-3-deoxygluconate kinase; PFAM: PfkB domain protein.
 
  
 0.474
Msed_1290
Propanoyl-CoA C-acyltransferase.
  
  
 0.442
Msed_1417
Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein.
  
    0.440
Msed_0597
PFAM: PfkB domain protein.
 
  
 0.423
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.