STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1289PFAM: extracellular solute-binding protein, family 1. (479 aa)    
Predicted Functional Partners:
Msed_1287
Trehalose ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.999
Msed_1288
Trehalose ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.998
Msed_1286
Trehalose ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.972
Msed_1179
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.967
Msed_0911
Alpha-glucosidase; PFAM: glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.600
Msed_1835
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
 
   
 0.554
Msed_0551
PFAM: SpoVT/AbrB domain protein.
 
  
 0.545
Msed_1178
PFAM: glycerophosphoryl diester phosphodiesterase.
 
  
 0.498
Msed_1458
PFAM: Aldose 1-epimerase.
 
   
 0.484
Msed_0288
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.473
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.