STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1330Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella. (302 aa)    
Predicted Functional Partners:
Msed_1324
Flagella assembly protein J-like protein.
  
  
 0.952
Msed_1327
Hypothetical protein.
  
  
 0.936
Msed_1328
Hypothetical protein.
  
  
 0.936
Msed_1326
ATPase involved in biogenesis of flagella-like protein.
  
  
 0.929
Msed_1325
PFAM: type II secretion system protein E.
  
  
 0.843
Msed_1329
Hypothetical protein.
     
 0.739
Msed_2090
PFAM: peptidase A24A, prepilin type IV; Peptidase A24B, FlaK-like.
      
 0.675
Msed_0650
PFAM: type II secretion system protein E.
  
  
 0.552
Msed_1197
Type II secretion system protein E; This flaI-like ATPbinding sequence was upregulated on Fe(II) oxidation; PFAM: type II secretion system protein E.
  
  
 0.552
Msed_2104
PFAM: type II secretion system protein E.
  
  
 0.552
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.