STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1345Thioesterase-like protein. (167 aa)    
Predicted Functional Partners:
Msed_0415
PFAM: NADH:flavin oxidoreductase/NADH oxidase.
 
   
 0.789
Msed_1343
Hypothetical protein.
     
 0.631
Msed_1344
Hypothetical protein.
     
 0.631
Msed_1021
Hypothetical protein.
  
     0.557
Msed_0972
PFAM: major facilitator superfamily MFS_1.
 
     0.551
Msed_0376
Conserved hypothetical protein.
 
     0.532
Msed_1086
PFAM: protein of unknown function DUF105.
 
     0.523
Msed_0841
PFAM: beta-lactamase domain protein.
 
     0.513
Msed_0322
PFAM: Rieske [2Fe-2S] domain protein.
  
    0.510
queC
exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
   
 
 0.507
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.