STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1359PFAM: major facilitator superfamily MFS_1. (393 aa)    
Predicted Functional Partners:
Msed_1046
PFAM: extracellular solute-binding protein, family 5.
 
   
 0.791
Msed_1358
5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
       0.723
Msed_1360
Putative membrane protein.
       0.631
Msed_0419
PFAM: major facilitator superfamily MFS_1.
 
     0.600
Msed_0258
PFAM: major facilitator superfamily MFS_1.
  
     0.584
Msed_0409
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
  
   0.581
Msed_1357
Conserved hypothetical protein.
       0.570
Msed_1252
PFAM: major facilitator superfamily MFS_1.
  
     0.568
Msed_0450
PFAM: protein of unknown function DUF1291.
 
     0.560
Msed_2176
PFAM: Lysine exporter protein (LYSE/YGGA).
 
     0.536
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.