STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1380PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein. (284 aa)    
Predicted Functional Partners:
Msed_1382
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.977
Msed_1381
ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like protein.
  
 
 0.935
Msed_1048
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.932
Msed_2205
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.929
Msed_0444
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.928
Msed_0443
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.919
Msed_1047
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.915
Msed_2204
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.909
Msed_0446
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
  
0.760
Msed_2207
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
  
0.748
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.