STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1381ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like protein. (249 aa)    
Predicted Functional Partners:
Msed_1382
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.982
Msed_1380
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein.
  
 
 0.935
Msed_1379
Hypothetical protein.
  
 
 0.915
Msed_0443
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.869
Msed_1047
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.865
Msed_2204
PFAM: binding-protein-dependent transport systems inner membrane component.
  
 
 0.841
Msed_1046
PFAM: extracellular solute-binding protein, family 5.
 
 
 0.803
Msed_0445
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
 
 0.763
Msed_0441
ABC-type dipeptide transport system periplasmic component-like protein.
 
 
 0.762
Msed_2203
PFAM: extracellular solute-binding protein, family 5.
  
 
 0.734
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.