STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1389Zn-dependent protease-like protein. (338 aa)    
Predicted Functional Partners:
Msed_0402
PFAM: peptidase U62, modulator of DNA gyrase.
  
     0.550
Msed_0972
PFAM: major facilitator superfamily MFS_1.
  
     0.549
Msed_1324
Flagella assembly protein J-like protein.
  
     0.543
Msed_1390
Hexokinase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type.
       0.540
Msed_1161
TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324.
  
     0.528
Msed_1034
PFAM: cobalt transport protein.
 
     0.520
Msed_1061
Hypothetical protein.
  
     0.504
Msed_0441
ABC-type dipeptide transport system periplasmic component-like protein.
 
     0.495
Msed_1160
TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324.
  
     0.486
Msed_1086
PFAM: protein of unknown function DUF105.
  
     0.483
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.