STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1393PFAM: peptidase M28. (361 aa)    
Predicted Functional Partners:
Msed_1394
Hypothetical protein.
       0.762
Msed_0434
PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain.
  
     0.655
Msed_0822
PFAM: band 7 protein.
  
     0.615
Msed_2082
SMART: AAA ATPase.
 
     0.587
Msed_1392
Hypothetical protein.
       0.561
Msed_0604
PFAM: amidohydrolase.
  
     0.553
Msed_0250
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
  
     0.538
Msed_0896
Hypothetical protein.
  
     0.498
Msed_2164
PFAM: protein of unknown function DUF87.
 
     0.496
soxL
Rieske (2Fe-2S) domain protein; Appears to have a function related to Fe(II) oxidation; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.488
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.