Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Msed_0129 | Msed_1417 | Trehalose synthase (ADP-glucose); PFAM: glycosyl transferase, group 1. | Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. | 0.935 |
Msed_0912 | Msed_1417 | PFAM: glycoside hydrolase, family 13 domain protein. | Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. | 0.944 |
Msed_0912 | Msed_1703 | PFAM: glycoside hydrolase, family 13 domain protein. | TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | 0.885 |
Msed_1062 | Msed_1417 | PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase. | Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. | 0.810 |
Msed_1062 | Msed_1703 | PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase. | TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | 0.495 |
Msed_1414 | Msed_1415 | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | Hypothetical protein. | 0.800 |
Msed_1414 | Msed_1416 | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | PFAM: thiamineS protein. | 0.895 |
Msed_1414 | Msed_1417 | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. | 0.834 |
Msed_1414 | Msed_1418 | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | Alpha-amylase; PFAM: glycoside hydrolase, family 57. | 0.819 |
Msed_1414 | Msed_1419 | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase. | 0.588 |
Msed_1414 | Msed_1420 | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | Glucoamylase; PFAM: glycoside hydrolase 15-related. | 0.588 |
Msed_1415 | Msed_1414 | Hypothetical protein. | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | 0.800 |
Msed_1415 | Msed_1416 | Hypothetical protein. | PFAM: thiamineS protein. | 0.800 |
Msed_1415 | Msed_1417 | Hypothetical protein. | Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. | 0.793 |
Msed_1415 | Msed_1418 | Hypothetical protein. | Alpha-amylase; PFAM: glycoside hydrolase, family 57. | 0.793 |
Msed_1415 | Msed_1419 | Hypothetical protein. | PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase. | 0.588 |
Msed_1415 | Msed_1420 | Hypothetical protein. | Glucoamylase; PFAM: glycoside hydrolase 15-related. | 0.588 |
Msed_1416 | Msed_1414 | PFAM: thiamineS protein. | D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase. | 0.895 |
Msed_1416 | Msed_1415 | PFAM: thiamineS protein. | Hypothetical protein. | 0.800 |
Msed_1416 | Msed_1417 | PFAM: thiamineS protein. | Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. | 0.790 |
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