STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1417Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. (564 aa)    
Predicted Functional Partners:
Msed_1418
Alpha-amylase; PFAM: glycoside hydrolase, family 57.
 
  
 0.968
Msed_1420
Glucoamylase; PFAM: glycoside hydrolase 15-related.
 
  
 0.936
Msed_0129
Trehalose synthase (ADP-glucose); PFAM: glycosyl transferase, group 1.
 
  
 0.933
Msed_1703
TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
  
 0.922
Msed_0912
PFAM: glycoside hydrolase, family 13 domain protein.
 
  
 0.920
Msed_1419
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase.
 
   
 0.879
Msed_1414
D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase.
 
     0.841
Msed_1415
Hypothetical protein.
       0.803
Msed_1416
PFAM: thiamineS protein.
       0.790
Msed_1412
PFAM: pyruvate kinase; Belongs to the pyruvate kinase family.
 
   
 0.752
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.