STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1417Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein. (564 aa)    
Predicted Functional Partners:
Msed_1703
TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
  
 0.993
Msed_0912
PFAM: glycoside hydrolase, family 13 domain protein.
 
  
 0.944
Msed_0129
Trehalose synthase (ADP-glucose); PFAM: glycosyl transferase, group 1.
 
  
 0.935
Msed_1418
Alpha-amylase; PFAM: glycoside hydrolase, family 57.
 
  
 0.879
Msed_1414
D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase.
 
     0.834
Msed_1062
PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase.
  
  
 0.810
Msed_1415
Hypothetical protein.
       0.793
Msed_1416
PFAM: thiamineS protein.
       0.790
Msed_1419
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase.
 
   
 0.776
Msed_1420
Glucoamylase; PFAM: glycoside hydrolase 15-related.
 
  
 0.762
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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