STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1491PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase. (278 aa)    
Predicted Functional Partners:
Msed_1791
PFAM: protein of unknown function, ATP binding.
  
 0.958
Msed_1490
FHA domain containing protein; PFAM: Forkhead-associated protein.
  
 
 0.941
Msed_1600
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase.
 
 0.896
Msed_0329
PFAM: protein kinase; SMART: serine/threonine protein kinase.
 
 
 0.888
Msed_2058
Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein.
 
 
 0.887
Msed_0149
Exonuclease of the beta-lactamase fold involved in RNA processing-like protein.
  
 0.882
Msed_1797
PFAM: protein kinase; SMART: serine/threonine protein kinase.
 
 
 0.882
Msed_2122
PFAM: alpha/beta hydrolase fold.
   
 0.872
Msed_0596
TBP-interacting protein TIP49; PFAM: TIP49-like; SMART: AAA ATPase.
  
 
 0.870
Msed_1492
PFAM: von Willebrand factor, type A.
 
     0.866
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.