STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1513TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB. (405 aa)    
Predicted Functional Partners:
Msed_2186
PFAM: transposase IS200-family protein.
 
   
 0.702
rps15
PFAM: ribosomal protein S15; ribosomal S13S15-like.
   
   0.640
Msed_1514
Putative membrane protein.
       0.625
Msed_1111
TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; Resolvase, N-terminal domain.
 
  
 0.567
Msed_1515
PFAM: protein of unknown function DUF6, transmembrane.
 
     0.554
Msed_1512
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
       0.497
Msed_1516
Hypothetical protein.
       0.401
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.