STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1618Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein. (172 aa)    
Predicted Functional Partners:
Msed_1616
Beta-ribofuranosylaminobenzene 5'-phosphate synthase; Catalyzes the condensation of 4-aminobenzoate (pABA) with 5- phospho-alpha-D-ribose 1-diphosphate (PRPP) to produce beta- ribofuranosylaminobenzene 5'-phosphate (beta-RFA-P).
       0.936
Msed_0390
PFAM: carbonic anhydrase.
   
 
 0.825
Msed_1617
PFAM: Fmu (Sun) domain protein; PUA domain containing protein.
       0.780
Msed_1302
PFAM: Radical SAM domain protein.
       0.757
Msed_1961
Dihydroorotase; PFAM: amidohydrolase.
  
  
 0.634
Msed_1615
PFAM: AMP-dependent synthetase and ligase.
     
 0.576
Msed_1614
TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain.
       0.558
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
     
 0.478
Msed_2134
PFAM: glycosyl transferase, family 4.
  
  
 0.449
Msed_0629
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein.
  
    0.439
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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