Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msed_1682Dehydrogenase (flavoprotein)-like protein. (325 aa)    
Predicted Functional Partners:
Msed_1681
Hypothetical protein.
       0.916
Msed_1680
Hypothetical protein.
       0.886
Msed_0331
PFAM: electron transfer flavoprotein beta-subunit.
  
 
 0.657
Msed_2082
SMART: AAA ATPase.
 
     0.600
Msed_1683
TIGRFAM: valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.587
Msed_0224
PFAM: protein of unknown function DUF343.
  
     0.584
slaB
Hypothetical protein; S-layer small protein. May anchor the complex to the cell membrane.
  
     0.568
Msed_1250
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.563
Msed_0334
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.561
Msed_0651
PFAM: type II secretion system protein.
 
     0.552
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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