Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Msed_1718 | Msed_1721 | Msed_1718 | Msed_1721 | Hypothetical protein. | SSU ribosomal protein S30E. | 0.569 |
Msed_1718 | Msed_1722 | Msed_1718 | Msed_1722 | Hypothetical protein. | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC. | 0.435 |
Msed_1718 | Msed_1724 | Msed_1718 | Msed_1724 | Hypothetical protein. | Hypothetical protein. | 0.426 |
Msed_1718 | Msed_1725 | Msed_1718 | Msed_1725 | Hypothetical protein. | PFAM: helix-turn-helix domain protein. | 0.426 |
Msed_1718 | flpA | Msed_1718 | Msed_1723 | Hypothetical protein. | rRNA 2'-O-methyltransferase fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.426 |
Msed_1718 | gatD | Msed_1718 | Msed_1720 | Hypothetical protein. | glutamyl-tRNA(Gln) amidotransferase subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | 0.646 |
Msed_1718 | gatE | Msed_1718 | Msed_1719 | Hypothetical protein. | glutamyl-tRNA(Gln) amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | 0.646 |
Msed_1718 | trm1 | Msed_1718 | Msed_1726 | Hypothetical protein. | N(2),N(2)-dimethylguanosine tRNA methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. | 0.426 |
Msed_1721 | Msed_1718 | Msed_1721 | Msed_1718 | SSU ribosomal protein S30E. | Hypothetical protein. | 0.569 |
Msed_1721 | Msed_1722 | Msed_1721 | Msed_1722 | SSU ribosomal protein S30E. | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC. | 0.634 |
Msed_1721 | Msed_1724 | Msed_1721 | Msed_1724 | SSU ribosomal protein S30E. | Hypothetical protein. | 0.594 |
Msed_1721 | Msed_1725 | Msed_1721 | Msed_1725 | SSU ribosomal protein S30E. | PFAM: helix-turn-helix domain protein. | 0.594 |
Msed_1721 | flpA | Msed_1721 | Msed_1723 | SSU ribosomal protein S30E. | rRNA 2'-O-methyltransferase fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.623 |
Msed_1721 | gatD | Msed_1721 | Msed_1720 | SSU ribosomal protein S30E. | glutamyl-tRNA(Gln) amidotransferase subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | 0.718 |
Msed_1721 | gatE | Msed_1721 | Msed_1719 | SSU ribosomal protein S30E. | glutamyl-tRNA(Gln) amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | 0.718 |
Msed_1721 | trm1 | Msed_1721 | Msed_1726 | SSU ribosomal protein S30E. | N(2),N(2)-dimethylguanosine tRNA methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. | 0.594 |
Msed_1722 | Msed_1718 | Msed_1722 | Msed_1718 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC. | Hypothetical protein. | 0.435 |
Msed_1722 | Msed_1721 | Msed_1722 | Msed_1721 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC. | SSU ribosomal protein S30E. | 0.634 |
Msed_1722 | Msed_1724 | Msed_1722 | Msed_1724 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC. | Hypothetical protein. | 0.784 |
Msed_1722 | Msed_1725 | Msed_1722 | Msed_1725 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC. | PFAM: helix-turn-helix domain protein. | 0.784 |
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