Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msed_1935Hypothetical protein. (281 aa)    
Predicted Functional Partners:
speH
Adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
       0.862
Msed_0331
PFAM: electron transfer flavoprotein beta-subunit.
  
 
 0.671
Msed_0334
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.596
Msed_1250
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.563
Msed_1938
PFAM: PP-loop domain protein.
  
    0.520
Msed_1937
PFAM: protein of unknown function DUF211.
       0.509
Msed_0332
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit.
  
 
 0.508
Msed_2089
Cobaltochelatase CobN subunit; PFAM: CobN/magnesium chelatase.
  
  
 0.503
Msed_1248
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit.
  
 
 0.477
Msed_2088
Protoporphyrin IX magnesium-chelatase; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; SMART: AAA ATPase.
  
  
 0.408
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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