STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1995PFAM: protein of unknown function DUF125, transmembrane. (164 aa)    
Predicted Functional Partners:
Msed_1937
PFAM: protein of unknown function DUF211.
 
     0.751
Msed_1996
Hypothetical protein.
       0.601
Msed_1997
PFAM: protein of unknown function DUF355.
 
     0.595
Msed_0090
Conserved hypothetical protein.
  
     0.541
Msed_2164
PFAM: protein of unknown function DUF87.
 
     0.533
Msed_1994
PFAM: Cupin domain protein; Cupin 2, conserved barrel domain protein.
 
     0.521
Msed_0053
Hypothetical protein.
 
     0.451
Msed_0505
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane proton-efflux P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein.
   
 
 0.437
Msed_0604
PFAM: amidohydrolase.
 
     0.419
Msed_2073
ATPase-like protein.
  
     0.411
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.