STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_1995PFAM: protein of unknown function DUF125, transmembrane. (164 aa)    
Predicted Functional Partners:
Msed_1937
PFAM: protein of unknown function DUF211.
 
     0.656
Msed_1997
PFAM: protein of unknown function DUF355.
 
     0.586
Msed_1996
Hypothetical protein.
       0.584
Msed_0090
Conserved hypothetical protein.
  
     0.541
Msed_2164
PFAM: protein of unknown function DUF87.
 
     0.534
Msed_1994
PFAM: Cupin domain protein; Cupin 2, conserved barrel domain protein.
 
     0.516
Msed_0053
Hypothetical protein.
 
     0.452
queC
exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
     
 0.433
Msed_0604
PFAM: amidohydrolase.
 
     0.420
Msed_2073
ATPase-like protein.
  
     0.411
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.