STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2020PFAM: Methyltransferase type 11; Methyltransferase type 12. (230 aa)    
Predicted Functional Partners:
rps5
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.807
Msed_2022
TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region.
       0.799
Msed_2021
Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein.
  
    0.797
Msed_1075
PFAM: Squalene/phytoene synthase.
   
 0.675
Msed_2024
Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein.
 
     0.666
rps24e
SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
  
  0.638
Msed_0739
Nucleic acid-binding protein consists of a PIN domain and a Zn-ribbon module-like protein.
   
 0.623
rps4e
PFAM: RNA-binding S4 domain protein; ribosomal protein S4E-like; ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family.
  
  0.614
Msed_2023
PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II.
  
    0.612
Msed_1494
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
 
 0.609
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.