STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2060PFAM: protein of unknown function DUF1641. (196 aa)    
Predicted Functional Partners:
Msed_2059
Sulfide-quinone oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
    0.897
Msed_2057
Conserved hypothetical protein.
       0.545
Msed_2058
Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein.
       0.545
Msed_1549
Conserved hypothetical protein.
       0.491
Msed_0924
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit.
   
   0.476
Msed_0944
PFAM: Nickel-iron dehydrogenase small subunit, N-terminal domain protein.
   
   0.476
Msed_0353
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
    0.474
Msed_1039
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
    0.456
Msed_0558
Sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
    0.426
Msed_1323
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
    0.426
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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