Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Msed_2064Transporter, CPA2 family; PFAM: CBS domain containing protein; sodium/hydrogen exchanger; TC 2.A.37. (507 aa)    
Predicted Functional Partners:
Msed_1081
Transporter, CPA2 family; PFAM: sodium/hydrogen exchanger; TC 2.A.37.
  
     0.656
Msed_1501
Transporter, CPA2 family; PFAM: sodium/hydrogen exchanger; TC 2.A.37.
  
     0.655
Msed_0505
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane proton-efflux P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein.
 
 
 0.594
Msed_2066
Uncharacterized membrane-associated protein-like protein.
  
    0.585
Msed_2065
PFAM: regulatory protein, MarR; iron dependent repressor.
       0.573
Msed_2067
PFAM: protein of unknown function DUF81.
       0.552
Msed_0779
Periplasmic solute-binding protein-like protein.
 
     0.429
Msed_1531
PFAM: protein of unknown function DUF6, transmembrane.
 
  
 0.419
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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