STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2065PFAM: regulatory protein, MarR; iron dependent repressor. (130 aa)    
Predicted Functional Partners:
Msed_2066
Uncharacterized membrane-associated protein-like protein.
       0.773
Msed_2067
PFAM: protein of unknown function DUF81.
       0.767
Msed_2064
Transporter, CPA2 family; PFAM: CBS domain containing protein; sodium/hydrogen exchanger; TC 2.A.37.
       0.573
Msed_0767
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator.
  
  
 0.516
Msed_1430
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit.
    
   0.457
Msed_0004
TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase.
  
    0.427
Msed_1658
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.408
Msed_0974
Hypothetical protein.
  
  
 0.407
Msed_1261
TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24, S26A and S26B.
   
    0.402
Msed_1666
TIGRFAM: peptidase S26B, signal peptidase.
   
    0.402
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.