STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2084PFAM: thioesterase superfamily protein. (311 aa)    
Predicted Functional Partners:
Msed_2082
SMART: AAA ATPase.
 
     0.946
Msed_2083
Hypothetical protein.
       0.942
Msed_2081
Hypothetical protein.
       0.938
Msed_2080
NADPH:sulfur oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.
       0.825
Msed_2078
Bifunctional phosphoglucose/phosphomannose isomerase.
  
  
 0.566
Msed_2079
Hypothetical protein.
       0.504
cysS
TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia.
       0.501
Msed_0264
PFAM: thioesterase superfamily protein.
    
 0.487
Msed_0273
PFAM: thioesterase superfamily protein.
    
 0.487
Msed_2058
Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein.
 
 
 
 0.413
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.