STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2093ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein. (278 aa)    
Predicted Functional Partners:
Msed_0805
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.899
Msed_0806
PFAM: transport system permease protein.
 
 
 0.898
Msed_2091
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein.
  
  
 0.866
Msed_2092
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.832
Msed_0807
PFAM: periplasmic binding protein.
 
     0.750
Msed_2090
PFAM: peptidase A24A, prepilin type IV; Peptidase A24B, FlaK-like.
       0.662
Msed_2089
Cobaltochelatase CobN subunit; PFAM: CobN/magnesium chelatase.
  
  
 0.567
Msed_0888
TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease, beta subunit; Urease, gamma subunit region.
       0.558
Msed_2056
TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein.
 
  
 0.541
Msed_2088
Protoporphyrin IX magnesium-chelatase; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; SMART: AAA ATPase.
       0.513
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.