STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2105Hypothetical protein. (527 aa)    
Predicted Functional Partners:
Msed_2104
PFAM: type II secretion system protein E.
  
  
 0.962
Msed_2103
Hypothetical protein.
     
 0.839
Msed_2100
PFAM: Fmu (Sun) domain protein.
       0.701
Msed_2099
precorrin-8X methylmutase.
       0.693
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
       0.693
Msed_2102
precorrin-6Y C5,15-methyltransferase (decarboxylating); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
       0.693
Msed_0650
PFAM: type II secretion system protein E.
  
  
 0.595
Msed_1197
Type II secretion system protein E; This flaI-like ATPbinding sequence was upregulated on Fe(II) oxidation; PFAM: type II secretion system protein E.
  
  
 0.595
Msed_1325
PFAM: type II secretion system protein E.
  
  
 0.525
Msed_2098
Hypothetical protein.
       0.416
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.