STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2157PFAM: Radical SAM domain protein. (343 aa)    
Predicted Functional Partners:
Msed_2159
Nucleotidyltransferase-like protein.
 
     0.824
Msed_2158
PFAM: uncharacterised conserved protein UCP017998.
       0.800
Msed_1598
PFAM: helix-turn-helix domain protein.
  
     0.676
Msed_2160
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein.
       0.645
Msed_0613
PFAM: GHMP kinase.
  
     0.622
Msed_1399
PFAM: CoA-binding domain protein.
      
 0.598
rnp4
Ribonuclease P protein subunit Rpp21; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
  
     0.576
Msed_1787
PFAM: protein of unknown function DUF54; Belongs to the UPF0201 family.
  
     0.572
Msed_1730
PFAM: protein of unknown function DUF373.
 
     0.510
Msed_0614
Pantothenate synthetase; PFAM: protein of unknown function DUF137.
  
     0.483
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.