STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2164PFAM: protein of unknown function DUF87. (582 aa)    
Predicted Functional Partners:
Msed_2165
Hypothetical protein.
       0.800
Msed_2163
PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase.
       0.792
Msed_2166
Conserved hypothetical protein.
 
     0.691
Msed_2073
ATPase-like protein.
 
     0.629
Msed_0612
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.585
Msed_0604
PFAM: amidohydrolase.
 
     0.578
Msed_1274
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.565
Msed_2082
SMART: AAA ATPase.
  
     0.565
Msed_0763
Conserved hypothetical protein.
   
 
 0.564
Msed_0162
Hypothetical protein.
  
     0.555
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.