STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2185TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; protein of unknown function DUF1225. (435 aa)    
Predicted Functional Partners:
Msed_2186
PFAM: transposase IS200-family protein.
 
   
 0.914
rps15
PFAM: ribosomal protein S15; ribosomal S13S15-like.
   
   0.640
Msed_0188
PFAM: transposase, IS605 OrfB.
  
     0.615
Msed_2187
Hypothetical protein.
       0.528
Msed_1111
TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; Resolvase, N-terminal domain.
 
  
 0.509
Msed_1818
PFAM: Bacterio-opsin activator, HTH domain protein.
  
     0.484
Msed_0972
PFAM: major facilitator superfamily MFS_1.
  
     0.463
Msed_1835
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
 
     0.458
Msed_0969
PFAM: holliday junction resolvase.
 
     0.445
Msed_0441
ABC-type dipeptide transport system periplasmic component-like protein.
 
     0.443
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.